Apple Cinnamon Greek Yogurt Muffins Recipe
Get ready to meet your new favorite way to start the day: Apple Cinnamon Greek Yogurt Muffins. These little gems wrap up all the rich aroma of baked apples and cozy cinnamon in a soft, tender crumb that’s made secretly wholesome with the addition of Greek yogurt. Each bite is the perfect balance of sweetness and spice, with juicy apple chunks for a burst of natural flavor. Whether you’re enjoying one for breakfast, as a snack, or slipping it into a lunchbox, this is a treat that always satisfies!

Ingredients You’ll Need
The beauty of Apple Cinnamon Greek Yogurt Muffins lies in just how simple the ingredient list is, yet every item pulls its weight in creating a moist, flavorful muffin. Here’s a breakdown of what goes into making this wholesome bake shine:
- All-purpose flour: The sturdy base that gives the muffins their classic, fluffy texture—easy and reliable every time.
- Apples: Freshly peeled and diced apples add juicy bursts of sweetness and amazing fragrance throughout every bite.
- Greek yogurt: The secret weapon for ultra-moist muffins and a satisfying boost of protein—plain, whole milk yogurt works best here.
- Brown sugar: Adds sweetness and depth from its slight molasses flavor, pairing beautifully with the cinnamon-spiced apples.
- Ground cinnamon: Classic spice that makes the muffins smell like pure autumn comfort as they bake.
- Baking powder: Provides a reliable lift, helping the muffins dome beautifully in the oven.
- Eggs: Vital for structure, acting as a binding agent and giving the muffins their delicate crumb.
- Vanilla extract: A splash deepens the warm, inviting flavors and rounds everything out.
- Salt: Just a pinch awakens all the flavors and balances the sweetness.
How to Make Apple Cinnamon Greek Yogurt Muffins
Step 1: Prep the Oven and Pan
Start by heating your oven to 350°F (175°C). Grab your muffin tin and line it with paper liners or give it a light mist of non-stick spray. Setting up at the start makes sure your batter goes into a ready, warm oven and ensures perfect muffins every time!
Step 2: Dry Ingredients—The Foundation
In a large mixing bowl, whisk together the all-purpose flour, baking powder, ground cinnamon, and salt. Taking a moment here to evenly distribute these creates a fluffy, consistent crumb in your Apple Cinnamon Greek Yogurt Muffins and guarantees the cinnamon is never clumpy.
Step 3: Wet Ingredients—Silky Smooth Base
In a separate bowl, whisk together the Greek yogurt, brown sugar, eggs, and vanilla extract until completely smooth. This step not only dissolves the sugar but lets the yogurt and eggs blend fully for a luscious, creamy batter.
Step 4: Bring It All Together
Pour the wet mixture right into your dry ingredients. Gently fold them together, taking care not to overmix (stop once you see no more streaks of flour). For the final flourish, fold in your juicy diced apples—this is where the muffins truly come alive!
Step 5: Fill the Muffin Tin
Divide the batter evenly among your muffin cups, filling each about three-quarters of the way full. This allows space to rise into that classic muffin dome, while ensuring each is packed with apple goodness.
Step 6: Bake to Perfection
Slide the tin into your preheated oven and bake for 18-22 minutes. The muffins are done when the tops turn golden and a toothpick poked in the center comes out clean or with only a crumb or two. Let them cool in the tin for 5 minutes to set, then transfer gently to a wire rack so they can finish cooling and get ready for devouring!
How to Serve Apple Cinnamon Greek Yogurt Muffins

Garnishes
For a bakery-worthy finish, dust your Apple Cinnamon Greek Yogurt Muffins with a touch of powdered sugar, or brush them with a little melted butter and sprinkle with extra cinnamon sugar while still warm. A dollop of vanilla Greek yogurt or a drizzle of honey on the side can also add a special touch when serving for guests.
Side Dishes
Pair these muffins with a piping hot cup of coffee, a creamy chai latte, or a big bowl of fruit. They’re fantastic alongside fluffy scrambled eggs for breakfast, or layered into a brunch spread with granola parfaits and fresh citrus salad to balance out the sweetness.
Creative Ways to Present
Turn your Apple Cinnamon Greek Yogurt Muffins into an after-dinner treat by slicing them in half and warming them up with a little whipped cream or vanilla ice cream. For a cozy autumn gathering, serve them as part of a muffin board alongside other flavors, small bowls of nuts, caramel sauce, and apple slices for dipping.
Make Ahead and Storage
Storing Leftovers
Keep your leftover Apple Cinnamon Greek Yogurt Muffins ultra-soft by storing them in an airtight container at room temperature for up to 3 days. If your kitchen is especially warm or humid, you can stash them in the fridge—just let them come up to room temp before enjoying for the best flavor and texture.
Freezing
These muffins freeze wonderfully! Once they’re completely cool, wrap them individually in plastic wrap and freeze in a zip-top bag for up to three months. This way, you can always have a quick breakfast or snack on hand—just like fresh baked.
Reheating
To reheat, simply pop a muffin in the microwave for 15-20 seconds from room temperature or extend the time slightly if reheating from frozen. For a crispier top, place them in a 300°F oven for about 8-10 minutes. The Greek yogurt keeps them moist, so they warm up beautifully.
FAQs
Can I use whole wheat flour instead of all-purpose flour?
Absolutely! Whole wheat flour works well in Apple Cinnamon Greek Yogurt Muffins, giving them a wholesome, nutty flavor. You might want to use a little less, or mix it half-and-half with all-purpose, to keep the muffins from getting too dense.
What type of apples are best for these muffins?
Firm varieties like Honeycrisp, Granny Smith, or Fuji are fantastic for baking—they hold their shape and add that sweet-tart pop. You can even mix two different kinds for depth of flavor.
Can I use nonfat Greek yogurt?
Yes, nonfat Greek yogurt will work, but full fat Greek yogurt gives the richest flavor and softest texture. If you’re using nonfat, the muffins will still be moist thanks to the apples, just a touch less decadent.
How can I make these muffins gluten-free?
You can swap the all-purpose flour with your favorite gluten-free baking blend (make sure it contains xanthan gum for structure). The rest of the ingredients in Apple Cinnamon Greek Yogurt Muffins are naturally gluten-free, so this swap is an easy one.
Can I add nuts or raisins?
Definitely! Chopped walnuts or pecans add a wonderful crunch, and raisins or dried cranberries bring extra bursts of sweetness. Stir them in when you add the apples so everything is evenly mixed.
Final Thoughts
If you’re looking to brighten your mornings or just want a treat that feels as good as it tastes, you’ve got to try these Apple Cinnamon Greek Yogurt Muffins. With every bite, you’ll get that gorgeous fragrance of cinnamon, bursts of tender apple, and a soft, moist crumb that will make you want another. Go on—bake a batch and see just how quickly they disappear!
PrintApple Cinnamon Greek Yogurt Muffins Recipe
These Apple Cinnamon Greek Yogurt Muffins are moist, flavorful, and perfect for breakfast or a snack. Filled with chunks of fresh apples and warm cinnamon, these muffins are a delightful treat.
- Prep Time: 15 minutes
- Cook Time: 20 minutes
- Total Time: 35 minutes
- Yield: 12 muffins
- Category: Breakfast, Snack
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Dry Ingredients:
- All-purpose flour: 2 cups (240g)
- Ground cinnamon: 1 teaspoon
- Baking powder: 2 teaspoons
- Salt: ½ teaspoon
Wet Ingredients:
- Apples: 1 ½ cups, peeled and diced (about 2 medium apples)
- Greek yogurt: 1 cup (240g)
- Brown sugar: ¾ cup (150g), packed
- Eggs: 2 large
- Vanilla extract: 1 teaspoon
Instructions
- Preheat the oven: Preheat the oven to 350°F (175°C).
- Mix dry ingredients: In a large mixing bowl, whisk together the all-purpose flour, baking powder, ground cinnamon, and salt.
- Combine wet ingredients: In another bowl, combine the Greek yogurt, brown sugar, eggs, and vanilla extract, whisking until smooth.
- Combine wet and dry: Pour the wet mixture into the dry ingredients and gently fold them together, then fold in the diced apples.
- Fill muffin tin: Scoop the batter into a muffin tin, filling each cup about ¾ full.
- Bake: Bake in the preheated oven for 18-22 minutes, or until a toothpick comes out clean.
- Cool: Let the muffins cool in the tin for 5 minutes before transferring them to a wire rack to cool completely.
Notes
- These muffins are best enjoyed fresh but can be stored in an airtight container for up to 3 days.
- You can add chopped nuts or raisins for extra texture and flavor.
Nutrition
- Serving Size: 1 muffin
- Calories: 180
- Sugar: 12g
- Sodium: 200mg
- Fat: 3g
- Saturated Fat: 1g
- Unsaturated Fat: 2g
- Trans Fat: 0g
- Carbohydrates: 32g
- Fiber: 2g
- Protein: 5g
- Cholesterol: 40mg
Keywords: Apple Cinnamon Muffins, Greek Yogurt Muffins, Breakfast, Snack, Baking